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1

Cancer systems biology and modeling: Microscopic scale and multiscale approaches

Masoudi-Nejad, Ali, Bidkhori, Gholamreza, Hosseini Ashtiani, Saman, Najafi, Ali, Bozorgmehr, Joseph H., Wang, Edwin

Journal:

Seminars in Cancer Biology

Year:

2015

Language:

english

File:

PDF, 1.80 MB

english, 2015

2

The influence of the use of improved sanitation facilities and improved drinking-water sources on the diarrhea-associated deaths in children under 5 years

Bidkhori, Mohammad, Yousefi, Mahmood, Rohani, Hosein, Ebrahimi, Hosein, Mohammadi, Ali Akbar

Journal:

Human and Ecological Risk Assessment An International Journal

Year:

2018

Language:

english

File:

PDF, 742 KB

english, 2018

3

Finite Eulerian posets which are binomial, Sheffer or triangular

Journal:

Journal of Combinatorial Theory, Series A

Year:

2012

Language:

english

File:

PDF, 301 KB

english, 2012

4

Commuting Graphs of Matrix Algebras

Akbari, S., Bidkhori, H., Mohammadian, A.

Journal:

Communications in Algebra

Year:

2008

Language:

english

File:

PDF, 202 KB

english, 2008

5

Strategies to improve homing of mesenchymal stem cells for greater efficacy in stem cell therapy

Naderi-Meshkin, Hojjat, Bahrami, Ahmad Reza, Bidkhori, Hamid Reza, Mirahmadi, Mahdi, Ahmadiankia, Naghmeh

Journal:

Cell Biology International

Year:

2015

Language:

english

File:

PDF, 1.73 MB

english, 2015

6

Mesenchymal stem cell based therapy for osteo-diseases

Ghasroldasht, Mohammad Mousaei, Irfan-Maqsood, Muhammad, Matin, Maryam M., Bidkhori, Hamid Reza, Naderi-Meshkin, Hojjat, Moradi, Ali, Bahrami, Ahmad Reza

Journal:

Cell Biology International

Year:

2014

Language:

english

File:

PDF, 542 KB

english, 2014

7

Experimental study of the influence of adhesive reinforcement in lap joints for composite structures subjected to mechanical loads

S.M.R. Khalili, A. Shokuhfar, S.D. Hoseini, M. Bidkhori, S. Khalili, R.K. Mittal

Journal:

International Journal of Adhesion and Adhesives

Year:

2008

Language:

english

File:

PDF, 3.17 MB

english, 2008

8

Experimental and Numerical Investigation on the High Velocity Impact Response of GLARE with Different Thickness Ratio

Hamed Ahmadi, Hadi Sabouri, Gholamhossein Liaghat, Emad Bidkhori

Journal:

Procedia Engineering

Year:

2011

Language:

english

File:

PDF, 316 KB

english, 2011

9

Comparative Analysis of Chemokine Receptor's Expression in Mesenchymal Stem Cells Derived from Human Bone Marrow and Adipose Tissue

Naghmeh Ahmadian kia, Ahmad Reza Bahrami, Marzieh Ebrahimi, Maryam M. Matin, Zeinab Neshati, Mahmood Rais Almohaddesin, Naser Aghdami, Hamid Reza Bidkhori

Journal:

Journal of Molecular Neuroscience

Year:

2011

Language:

english

File:

PDF, 516 KB

english, 2011

10

r-Strong edge colorings of graphs

S. Akbari, H. Bidkhori, N. Nosrati

Journal:

Discrete Mathematics

Year:

2006

Language:

english

File:

PDF, 196 KB

english, 2006

11

High prevalence of HTLV-I infection in Mashhad, Northeast Iran: A population-based seroepidemiology survey

Houshang Rafatpanah, Mohammad Reza Hedayati-Moghaddam, Farhad Fathimoghadam, Hamid Reza Bidkhori, Seyed Khosro Shamsian, Sanaz Ahmadi, Leila Sohgandi, Mahmoud Reza Azarpazhooh, Seyed Abdolrahim Rezaee

Journal:

Journal of Clinical Virology

Year:

2011

Language:

english

File:

PDF, 251 KB

english, 2011

12

Spectrophotometric investigation of copper (II)–erythromycin interaction

Hillsa Bidkhori, Raziyeh Sanavikhoshnood, Zarin Eshaghi

Journal:

Clinical Biochemistry

Year:

2011

Language:

english

File:

PDF, 55 KB

english, 2011

13

Candidate gene prioritization

Masoudi-Nejad, Ali, Meshkin, Alireza, Haji-Eghrari, Behzad, Bidkhori, Gholamreza

Journal:

Molecular Genetics and Genomics

Year:

2012

Language:

english

File:

PDF, 763 KB

english, 2012

14

Chitosan-based injectable hydrogel as a promising in situ forming scaffold for cartilage tissue engineering

Naderi-Meshkin, Hojjat, Andreas, Kristin, Matin, Maryam M., Sittinger, Michael, Bidkhori, Hamid Reza, Ahmadiankia, Naghmeh, Bahrami, Ahmad Reza, Ringe, Jochen

Journal:

Cell Biology International

Year:

2014

Language:

english

File:

PDF, 1.32 MB

english, 2014

15

HomoTarget: A new algorithm for prediction of microRNA targets in Homo sapiens

Ahmadi, Hamed, Ahmadi, Ali, Azimzadeh-Jamalkandi, Sadegh, Shoorehdeli, Mahdi Aliyari, Salehzadeh-Yazdi, Ali, Bidkhori, Gholamreza, Masoudi-Nejad, Ali

Journal:

Year:

2013

Language:

english

File:

PDF, 772 KB

english, 2013

16

Analysis of novel mutations in BRCA1 in Iranian families with breast cancer

Sadr-Nabavi, Ariane, Dastpak, Mahtab, Homaei-Shandiz, Fatemeh, Bahrami, Ahmad Reza, Bidkhori, Hamid-Reza, Raeesolmohaddeseen, Mahmood

Journal:

Year:

2014

Language:

english

File:

PDF, 1.07 MB

english, 2014

17

[IEEE 2012 Winter Simulation Conference - (WSC 2012) - Berlin, Germany (2012.12.9-2012.12.12)] Proceedings Title: Proceedings of the 2012 Winter Simulation Conference (WSC) - Combining metamodel techniques and Bayesian selection procedures to derive computationally efficient simulation-based optimization algorithms

Osorio, Carolina, Bidkhori, Hoda

Year:

2012

Language:

english

File:

PDF, 231 KB

english, 2012

18

Construction and Quantitative Evaluation of a Dual Specific Promoter System for Monitoring the Expression Status ofStra8andc-kitGenes

Dastpak, Mahtab, Matin, Maryam M., Farshchian, Moein, Arsenijevic, Yvan, Momeni-Moghaddam, Madjid, Sisakhtnezhad, Sajjad, Boozarpour, Sohrab, Bidkhori, Hamid Reza, Mirahmadi, Mahdi, Bahrami, Ahmad Rez

Journal:

Molecular Biotechnology

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

19

On the performance of affine policies for two-stage adaptive optimization: a geometric perspective

Bertsimas, Dimitris, Bidkhori, Hoda

Journal:

Mathematical Programming

Year:

2015

Language:

english

File:

PDF, 380 KB

english, 2015

20

A Bijective Proof of a Theorem of Knuth

BIDKHORI, HODA, KISHORE, SHAUNAK

Journal:

Combinatorics Probability & Computing

Year:

2011

Language:

english

File:

PDF, 468 KB

english, 2011

21

[SpringerBriefs in Systems Biology] Microscopic Scale of Cancer Systems Biology Volume 13 ||

Masoudi-Nejad, Ali, Bidkhori, Gholamreza, Ashtiani, Saman Hosseini, Najafi, Ali

Year:

2015

Language:

english

File:

PDF, 4.90 MB

english, 2015

22

Population Movement and Virus Spreading: HEV Spreading in a Pilgrimage City, Mashhad in Northeast Iran; an Example

Ahmadi Ghezeldasht, Sanaz, Miri, Rahele, Hedayatimoghadam, Mohamadreza, Shamsian, Aliakbar, Bidkhori, Hamidreza, Fathimoghadam, Fahad, Rezaee, Seyyed. Abdorrahim.

Journal:

Hepatitis Monthly

Year:

2013

Language:

english

File:

PDF, 576 KB

english, 2013

23

FogLight: An Efficient Matrix-Based Approach to Construct Metabolic Pathways by Search Space Reduction

Khosraviani, Mehrshad, Saheb Zamani, Morteza, Bidkhori, Gholamreza

Journal:

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

24

Retraction Note to: Candidate gene prioritization

Masoudi-Nejad, Ali, Meshkin, Alireza, Haji-Eghrari, Behzad, Bidkhori, Gholamreza

Journal:

Molecular Genetics and Genomics

Year:

2015

Language:

english

File:

PDF, 351 KB

english, 2015

25

Analyzing process flexibility: A distribution-free approach with partial expectations

Bidkhori, Hoda, Simchi-Levi, David, Wei, Yehua

Journal:

Operations Research Letters

Year:

2016

Language:

english

File:

PDF, 398 KB

english, 2016

26

A Systems Biology Approach to Reconcile Metabolic Network Models with Application to Synechocystis sp. PCC 6803 for Biofuel Production

Mohammadi, Reza, Fallah Mehrabadi, Jalil, Bidkhori, Gholamreza, Zahiri, Javad, Javad Niroomand, Mohammad, Masoudi-Nejad, Ali

Journal:

Molecular BioSystems

Year:

2016

Language:

english

File:

PDF, 992 KB

english, 2016

27

Genetically Modified Human Adipose-Derived Mesenchymal Stem Cells Overexpressing CXCR4R334X, a Hyper Functional Mutant Receptor, Display Enhanced Migration

Bidkhori, H., Bahrami, A., Farshchian, M., Naderi-Meshkin, H., Heirani, A., Mirahmadi, M., Dastpak, M., Hasanzade, H., Farid, R., Ahmadiankia, N., Bakhtiari, H., Matin, M.

Journal:

Year:

2016

Language:

english

File:

PDF, 108 KB

english, 2016

28

A pathology atlas of the human cancer transcriptome

Uhlen, Mathias, Zhang, Cheng, Lee, Sunjae, Sjöstedt, Evelina, Fagerberg, Linn, Bidkhori, Gholamreza, Benfeitas, Rui, Arif, Muhammad, Liu, Zhengtao, Edfors, Fredrik, Sanli, Kemal, von Feilitzen, Kalle,

Journal:

Year:

2017

Language:

english

File:

PDF, 4.91 MB

english, 2017

29

Chemokine Receptors Expression in MSCs: Comparative Analysis in Different Sources and Passages

Heirani-Tabasi, Asieh, Toosi, Shirin, Mirahmadi, Mahdi, Mishan, Mohammad Amir, Bidkhori, Hamid Reza, Bahrami, Ahmad Reza, Behravan, Javad, Naderi-Meshkin, Hojjat

Journal:

Tissue Engineering and Regenerative Medicine

Year:

2017

Language:

english

File:

PDF, 3.76 MB

english, 2017

30

TCSBN: a database of tissue and cancer specific biological networks

Lee, Sunjae, Zhang, Cheng, Arif, Muhammad, Liu, Zhengtao, Benfeitas, Rui, Bidkhori, Gholamreza, Deshmukh, Sumit, Al Shobky, Mohamed, Lovric, Alen, Boren, Jan, Nielsen, Jens, Uhlen, Mathias, Mardinoglu

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.54 MB

english, 2017

31

Supportive properties of basement membrane layer of human amniotic membrane enable development of tissue engineering applications

Iranpour, Sonia, Mahdavi-Shahri, Nasser, Miri, Raheleh, Hasanzadeh, Halimeh, Bidkhori, Hamid Reza, Naderi-Meshkin, Hojjat, Zahabi, Ehsan, Matin, Maryam M.

Journal:

Cell and Tissue Banking

Year:

2018

Language:

english

File:

PDF, 5.58 MB

english, 2018

32

Diarrhea deaths in children among countries with different levels of the human development index

Riahi, Mina, Mohammadi, Ali Akbar, Moghadam, Vahid Kazemi, Robati, Zahra, Bidkhori, Mohammad

Journal:

Year:

2018

Language:

english

File:

PDF, 753 KB

english, 2018

33

Augmented migration of mesenchymal stem cells correlates with the subsidiary CXCR4 variant

Heirani-Tabasi, Asieh, Naderi-Meshkin, Hojjat, Matin, Maryam M., Mirahmadi, Mahdi, Shahriyari, Mina, Ahmadiankia, Naghmeh, Sanjar Moussavi, Nasser, Bidkhori, Hamid Reza, Raeesolmohaddeseen, Mahmood, B

Journal:

Cell Adhesion & Migration

Year:

2018

Language:

english

File:

PDF, 1.34 MB

english, 2018

34

Dataset on the prevalence of tobacco smoking in men and women of selected countries whit difference human development

Riahi, Mina, Mohammadi, Ali Akbar, Rohani, Hosein, Bidkhori, Mohammad

Journal:

Year:

2018

Language:

english

File:

PDF, 369 KB

english, 2018

35

Reconstruction of an Integrated Genome-Scale Co-Expression Network Reveals Key Modules Involved in Lung Adenocarcinoma

Bidkhori, Gholamreza, Narimani, Zahra, Hosseini Ashtiani, Saman, Moeini, Ali, Nowzari-Dalini, Abbas, Masoudi-Nejad, Ali, Winn, Robert A.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.36 MB

english, 2013

36

High cell density perfusion culture has a maintained exoproteome and metabolome

Zamani, Leila, Lundqvist, Magnus, Zhang, Ye, Aberg, Magnus, Edfors, Fredrik, Bidkhori, Gholamreza, Lindahl, Anna, Mie, Axel, Mardinoglu, Adil, Field, Raymond, Turner, Richard, Rockberg, Johan, Chottea

Journal:

Biotechnology Journal

Year:

2018

Language:

english

File:

PDF, 1.27 MB

english, 2018

37

Tobacco tax and Price in the developed and developing countries in the World

Rohani, Hosein, Mohammadi, Ali Akbar, Azimi, Elahe, Bidkhori, Mohammad

Journal:

Year:

2018

Language:

english

File:

PDF, 517 KB

english, 2018

38

Molecular Mechanisms behind Free Radical Scavengers Function against Oxidative Stress

Ahmadinejad, Fereshteh, Geir Møller, Simon, Hashemzadeh-Chaleshtori, Morteza, Bidkhori, Gholamreza, Jami, Mohammad-Saeid

Journal:

Year:

2017

Language:

english

File:

PDF, 265 KB

english, 2017

39

Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling

Rosario, Dorines, Benfeitas, Rui, Bidkhori, Gholamreza, Zhang, Cheng, Uhlen, Mathias, Shoaie, Saeed, Mardinoglu, Adil

Journal:

Frontiers in Physiology

Year:

2018

Language:

english

File:

PDF, 4.03 MB

english, 2018

40

Tamoxifen-Induced Apoptosis of MCF-7 Cells via GPR30/PI3K/MAPKs Interactions: Verification by ODE Modeling and RNA Sequencing

Rouhimoghadam, Milad, Safarian, Shahrokh, Carroll, Jason S., Sheibani, Nader, Bidkhori, Gholamreza

Journal:

Frontiers in Physiology

Year:

2018

Language:

english

File:

PDF, 1.48 MB

english, 2018

41

Metabolic Network-Based Identification and Prioritization of Anticancer Targets Based on Expression Data in Hepatocellular Carcinoma

Bidkhori, Gholamreza, Benfeitas, Rui, Elmas, Ezgi, Kararoudi, Meisam Naeimi, Arif, Muhammad, Uhlen, Mathias, Nielsen, Jens, Mardinoglu, Adil

Journal:

Frontiers in Physiology

Year:

2018

Language:

english

File:

PDF, 2.30 MB

english, 2018

42

Using paracrine effects of Ad-MSCs on keratinocyte cultivation and fabrication of epidermal sheets for improving clinical applications

Hassanzadeh, Halimeh, Matin, Maryam M., Naderi-Meshkin, Hojjat, Bidkhori, Hamid Reza, Mirahmadi, Mahdi, Raeesolmohaddeseen, Mahmood, Sanjar-Moussavi, Nasser, Bahrami, Ahmad Reza

Journal:

Cell and Tissue Banking

Year:

2018

Language:

english

File:

PDF, 1.95 MB

english, 2018

43

ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling

Zhang, Cheng, Bidkhori, Gholamreza, Benfeitas, Rui, Lee, Sunjae, Arif, Muhammad, Uhlén, Mathias, Mardinoglu, Adil

Journal:

Frontiers in Physiology

Year:

2018

Language:

english

File:

PDF, 542 KB

english, 2018

44

Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes

Bidkhori, Gholamreza, Benfeitas, Rui, Klevstig, Martina, Zhang, Cheng, Nielsen, Jens, Uhlen, Mathias, Boren, Jan, Mardinoglu, Adil

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 2.38 MB

english, 2018

45

Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis

Benfeitas, Rui, Bidkhori, Gholamreza, Mukhopadhyay, Bani, Klevstig, Martina, Arif, Muhammad, Zhang, Cheng, Lee, Sunjae, Cinar, Resat, Nielsen, Jens, Uhlen, Mathias, Boren, Jan, Kunos, George, Mardinog

Journal:

Year:

2018

Language:

english

File:

PDF, 8.66 MB

english, 2018

46

Do socio‐economic factors affect prevalence of multiple sclerosis in Iran?

Pakdel, Manizhe, Hedström, Anna, Bidkhori, Mohammad, Hadei, Mostafa, Kazemi Moghaddam, Vahid, Sarmadi, Mohammad, Zohdi, Sara, Marufi, Nilufar

Journal:

Acta Neurologica Scandinavica

Year:

2019

Language:

english

File:

PDF, 321 KB

english, 2019

47

Post-mortem cortical transcriptomics of Lewy body dementia reveal mitochondrial dysfunction and lack of neuroinflammation

Rajkumar, Anto P., Bidkhori, Gholamreza, Shoaie, Saeed, Clarke, Emily, Morrin, Hamilton, Hye, Abdul, Williams, Gareth, Ballard, Clive, Francis, Paul, Aarsland, Dag

Journal:

American Journal of Geriatric Psychiatry

Year:

2019

File:

PDF, 789 KB

2019

48

Do socio‐economic factors affect prevalence of multiple sclerosis in Iran?

Pakdel, Manizhe, Hedström, Anna, Bidkhori, Mohammad, Hadei, Mostafa, Kazemi Moghaddam, Vahid, Sarmadi, Mohammad, Zohdi, Sara, Marufi, Nilufar

Journal:

Acta Neurologica Scandinavica

Year:

2019

File:

PDF, 321 KB

2019

49

The IL-18, IL-12, and IFN-Î³ expression in HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) patients, HTLV-1 carriers, and healthy subjects

Bidkhori, Hamid Reza, Hedayati-Moghaddam, Mohammad Reza, Mosavat, Arman, Valizadeh, Narges, Tadayon, Mohsen, Ahmadi Ghezeldasht, Sanaz, Rafatpanah, Houshang, Rezaee, Seyed Abdolrahim

Journal:

Journal of NeuroVirology

Year:

2020

File:

PDF, 426 KB

2020

50

The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against nonâalcoholic fatty liver disease

Zhang, Cheng, Bjornson, Elias, Arif, Muhammad, Tebani, Abdellah, Lovric, Alen, Benfeitas, Rui, Ozcan, Mehmet, Juszczak, Kajetan, Kim, Woonghee, Kim, Jung Tae, Bidkhori, Gholamreza, StÃ¥hlman, Marcus,

Journal:

Molecular Systems Biology

Year:

2020

File:

PDF, 2.18 MB

2020

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